Current courses

Biomedical data science scholarly literature (BMI 881, Fall 2024) github source

Biomedical data science professional skills (BMI 883/884, Fall 2024) github source


Short courses

Analysis of BXD mouse lines with R/qtl2

Complex Trait Community meeting, San Diego, CA (June 9, 2019)

https://github.com/kbroman/Teaching_CTC2019

Jupyter notebook: Binder

RStudio: Binder


2nd International Workshop on Advanced R and R/qtl

ICRISAT, Patancheru, Andhra Pradesh, India (Dec 3-7, 2018)

https://github.com/kbroman/icrisat2018


Reproducible Research Workshop

Reproducible Research Workshop, Summer Institute in Statistics for Big Data, Seattle, WA (16-18 July 2018)

Reproducible Research Workshop, Summer Institute in Statistics for Big Data, Seattle, WA (17-19 July 2017)


R/qtl and R/qtl2 workshop

R/qtl and R/qtl2 workshop, Complex Trait Community meeting, Memphis, TN (13 June 2017)


Data Carpentry

UW-Madison Madison, WI (27-28 Aug 2018)

UW-Madison Madison, WI (4-5 Jun 2018)

UW-Madison Madison, WI (8-9 Jan 2018)

National Society of Black Engineers Professional Development Conference Chicago, IL (28 Sept 2017)

UW-Madison Madison, WI (19-20 June 2017)

UW-Madison, Madison, WI (10-11 January 2017)

UW-Madison, Madison, WI (23-24 August 2016)

UW-Madison, Madison, WI (1-2 June 2016)

Software Carpentry

UW-Madison (for Social Scientists), Madison, WI (3-4 June, 2015)

Washington State University, Pullman, WA (27-28 April 2015)

UW-Madison, Madison, WI (25-26 August 2014)


R/qtl workshop at Texas A&M, 2 Sep 2015


Short course on Systems Genetics at The Jackson Lab

Oct 16-Oct 22, 2016

Sep 27-Oct 3, 2015

Sep 27-Oct 4, 2014

Sep 8-14, 2013

Oct 28-Nov 4, 2012

Oct 2-9, 2011

Sep 19-25, 2010

Oct 19-25, 2009

Sep 23-29, 2008


Short course on Complex Trait Analysis at The Jackson Lab

Oct 11-17, 2007

Sep 16-22, 2006

Oct 5-11, 2005

Sep 16-22, 2004

Oct 9-15, 2003

Sep 18-24, 2002


Training course on field trial & QTL analysis using R & R/qtl

ICRISAT, Patancheru, Andhra Pradesh, India (Dec 3-6, 2012)


NeuroproMiSe training course in genetic analysis and bioinformatics

Lund, Sweden (Jan 8-12, 2007)


Summer Institute in Statistical Genetics, QTL Mapping II module

(formerly at NC State University, now held at the University of Washington, Seattle)

Summer, 2006

Summer, 2005

Summer, 2004

Summer, 2003

Summer, 2002


Miscellaneous lectures

BMI/Stat 877 (Statistical methods for molecular biology), Spring 2022

  • QTL mapping in multi-parent populations pdf icon GitHub

Hort 615 (Genetic mapping)

QTL mapping in MAGIC populations with R/qtl2 GitHub


BMI 773 (Clinical research informatics)

  • Steps toward reproducible research pdf icon notes icon video

  • Exploratory data analysis pdf icon notes icon


My experiences in statistical consulting

Statistical Consulting course, Department of Statistics, UW–Madison


Experimental design, basic statistics, and sample size determination for animal-based research

Enhancing Humane Science/Improving Animal Research course
Center for Alternatives to Animal Testing, Johns Hopkins University


Recombination and linkage

NS 881 (Dale Schoeller)
Department of Nutritional Sciences, University of Wisconsin - Madison
20 Feb 2008: [ ppt (2.2M) | pdf (1.1M) ]

PHS 904 Genetic Epidemiology (Engelman)
Population Health Sciences, University of Wisconsin - Madison
24 Jan 2008: [ ppt (3.8M) | pdf (1.3M) ]


Identifying QTL in experimental crosses

Advanced Topics in Human Genetics (Reeves and Feinberg)
Human Genetics, Johns Hopkins School of Medicine
9 Apr 2007: pdf (2.2M)
27 Feb 2006: pdf (461k)
28 Feb 2005: pdf (461k)
25 Feb 2004: pdf (461k)
27 Feb 2003: pdf (475k)
12 Feb 2002: pdf (750k)
16 Feb 2001: pdf (587k)
18 Feb 2000: pdf (587k)


Hopkins Biostatistics Student Computing Club

Mathematica
27 Apr 2007: [pdf (70k) | b/w pdf (77k) | Code]

How to build a web page
8 Dec 2006: [ppt (1.0M) | pdf (618k)]
11 Nov 2005: [ppt (1.1M) | pdf (618k)]


Perl for human linkage analysis

Biocomputing I: Perl for bioinformatics (Pineda)
Biostatistics, Johns Hopkins Bloomberg School of Public Health
26 Oct 2005: pdf (42k)
6 Dec 2004: pdf (42k)
24 Oct 2003: pdf (42k)
14 May 2003: pdf (42k)


Former courses at UW-Madison

Advanced data analysis (BMI 826, Spring 2020)

Biomedical data science scholarly literature (BMI 882, Spring 2023)

Biomedical data science professional skills (BMI 884, Spring 2023)

Statistical methods for molecular biology (Stat 877), with many others (Spring 2019)

Tools for reproducible research (BMI 826-003; Spring, 2016)

Plant breeding and plant genetics seminar (Agronomy 957; Spring, 2018)

Statistical methods for QTL mapping (BMI 826-001; Fall, 2012)

GAW 17 course (Pop Health 904 Sec 003), with many others

Introductory applied statistics for the life sciences (Stat 371)


Courses taught at Johns Hopkins

Special topics in genetics and genomics (140.668)

Statistics for laboratory scientists (140.615-616)

Statistical computing (140.776)

Introduction to computing

Genetics for statisticians (140.667)

Statistical genetics (140.668)

Advanced statistical computing (140.778)