Lecture 6: Managing genome scan data

In the textbooks

• Ott: Section 11.5

Other references

• HM Stringham and M Boehnke (1996) Identifying marker typing incompatibilities in linkage analysis. Am J Hum Genet 59:946-950
• JR O'Connell and DE Weeks (1998) PedCheck: A program for identification of genotype incompatibilities in linkage analysis. Am J Hum Genet 6:259-266
• M Boehnke and NJ Cox (1997) Accurate inference of relationships in sib-pair linkage studies. Am J Hum Genet 61:423-429
• MG Ehm and M Wagner (1998) A test statistic to detect errors in sib-pair relationships. Am J Hum Genet 62:181-188
• HHH Goring and J Ott (1997) Relationship estimation in affected sib pair analysis of late-onset diseases. Eur J Hum Genet 5:69-77
• KW Broman and JL Weber (1998) Estimation of pairwise relationships in the presence of genotyping errors. Am J Hum Genet 63:861-869
• MS McPeek and L Sun (2000) Statistical tests for detection of misspecified relationships by use of genome-scan data. Am J Hum Genet 66:1076-1094
• KW Broman (1999) Cleaning genotype data. In: L Goldin, CI Amos, GA Chase, AM Goldstein, GP Jarvik, MM Martinez, BK Suarez, DE Weeks, EM Wijsman and JE MacCluer. Genetics Workshop 11: Analysis of genetic and environmental factors in common diseases.
• RL Schwartz, TC Christiansen and L Wall (1997) Learning perl, 2nd edition. O'Reilly & Associates.
• L Wall et al. (1996) Programming perl, 2nd edition. O'Reilly & Associates.
• T Christiansen et al. (1998) Perl cookbook. O'Reilly & Associates.
• The perl CD bookshelf: 6 bestselling books on CD-Rom. O'Reilly & Associates.