# these examples rely on the R/qtl package, www.rqtl.org
# install R/qtl package, within R, by typing install.packages("qtl")

all: knitr_example.html knitr_example_asciidoc.html knitr_example.pdf markdown_example.html

R_OPTS=--no-save --no-restore --no-init-file --no-site-file # vanilla, but with --environ

knitr_example.html: knitr_example.Rmd
	R ${R_OPTS} -e "rmarkdown::render('knitr_example.Rmd')"

knitr_example_asciidoc.html: knitr_example.Rasciidoc
	R ${R_OPTS} -e "library(knitr);knit('knitr_example.Rasciidoc')"
	asciidoc -o knitr_example_asciidoc.html knitr_example.txt

knitr_example.pdf: knitr_example.Rnw
	R ${R_OPTS} -e "library(knitr);knit('knitr_example.Rnw')"
	pdflatex knitr_example.tex

markdown_example.html: markdown_example.md
	R ${R_OPTS} -e "rmarkdown::render('markdown_example.md')"
# Note that you could also use
#	R ${R_OPTS} -e "markdown::markdownToHTML('markdown_example.md', 'markdown_example.html')"

clean:
	rm knitr_example.md knitr_example_asciidoc.txt knitr_example.tex