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Data for the paper:

   Bjornsson et al., SNP-specific array-based allele-specific
   expression analysis, Genome Research.
   
Oligo mixture experiment (Fig. 2)

Data compiled by Karl W Broman, University of Wisconsin-Madison
kbroman@biostat.wisc.edu
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2005-10-10_12plex_Feinberg_ASE_both.ndf.gz

    gzipped "NDF" file giving information on the chip design


*.xls.gz

    gzipped "xys" files, with the actual data (probe intensities) for
    each of the chips.  Note that one chip (59992) was scanned twice
    with different PMT settings.  Note that these are 12-well chips.


oligomixture_chips.csv

    Allocation of mixtures to wells on each chip


design.xls

    Global description of the design.  There are 24 mixtures, and two
    alleles at each of ten genes.  L, M and H indicate the total
    amount of oligo being low, medium or high.  The number (-5, -4,
    -1, 0, +1, +4, +5) indicates the ratio of the two alleles at a
    gene.


amounts.xls

    The amounts for each of the two alleles at each gene in each of
    the 24 mixtures.


amounts_detail.xls

    More detailed information about the amounts of the individual
    alleles in each mixture, including information on the actual SNPs
    used.

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